Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs34604204 | chr20:30247097 | TAAAG/T | 6.07E-5 | 67 | 27.9 | 14.23 | 7.6 | KM Plot |
UVM | rs34784238 | chr17:79658412 | T/G | 1.98E-14 | 66 | 26.6 | 23.4 | 0.23 | KM Plot |
UVM | rs34849386 | chr15:40871377 | G/GT | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |
UVM | rs34981673 | chr12:9806219 | A/C | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs35013390 | chr12:9807091 | C/CTT | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs35159151 | chr2:239020840 | GCTTT/G | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs35280686 | chr12:9812516 | A/C | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs35377175 | chr3:53747617 | C/T | 1.25E-8 | 66 | 27.9 | 27.63 | 12.33 | KM Plot |
UVM | rs35414202 | chr3:53746784 | G/T | 1.25E-8 | 66 | 27.9 | 27.63 | 12.33 | KM Plot |
UVM | rs35517770 | chr15:26331036 | TAA/T | 9.28E-14 | 65 | 26.5 | 28.93 | 0.15 | KM Plot |
UVM | rs35524631 | chr2:239021568 | A/G | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs35616202 | chr12:9818246 | CAT/C | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs35642909 | chr12:9806405 | G/A | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs35671537 | chr12:9817395 | A/G | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs35884042 | chr15:40891071 | G/A | 1.26E-5 | 67 | 27.87 | 24.87 | 17.07 | KM Plot |